The story takes place in a world looks like the 19th century Europe. The Earl of Millennium plots to massacre the human beings by AKUMAs, which are weapons made from machines, sprits, and tragedies. On the other hand, there is people stand up to the Earl. They're exorcists of Dark Religious Organization. They fight against the Earl with innocence. The innocence is a divine substance scattered around the world as various forms, and it makes strange phenomena. However, once it is used by an exorcist, it becomes a powerful weapon against AKUMA.

The protagonist, Yoshiyuki Sakurai, was born when Sakura Yoshino, weary of being alone for so long, wished upon a prototype artificial wish-granting magical sakura tree for a family. Similar to its predecessor, the story takes place on the same island, Hatsunejima, in Japan, and set fifty-three years after the original anime. The Asakura sisters are the granddaughters of Junichi Asakura and Nemu Asakura from the first Da Capo. Sakura Yoshino and Junichi are the only returning characters, and Nemu is the only other character to be mentioned by name.

Hatsune-Jima was once well-known for its cherry trees, which would bloom no matter what time of year it was. Two years ago, the island's cherry trees lost this ability and all became ordinary cherry trees that bloom only in the spring. Jun'ichi Asakura is now a graduating senior at Kazami Academy, and is surrounded by many close friends, old and new alike. On a stormy summer day, a mysterious young girl, Aisia, arrives at Jun'ichi's door. She is looking for Sakura's grandmother to study magic, ultimately hoping to bring happiness to everyone.

On Daisuke Niwa's fourteenth birthday, Risa Harada, the girl he tried to give a love letter to, told him, "You're a good friend". That day, when the heartbroken Daisuke thinks of Risa, he suddenly transforms into the legendary great phantom thief, Dark. And he has to go, according to the note his mother left, to steal the Sacred Maiden.!? It's Daisuke and company's adventures on streets that resemble Europe! You can't miss it!!

Junichi Asakura lives with his adoptive sister Nemu in the crescent-shaped island of Hatsune Jima, a place where cherry blossoms bloom throughout the year. In this island, people have mysterious powers and attributes. For example, Junichi has the power to see other people's dreams, and he was also taught by his grandmother to magically create sweets. One day, Junichi's cousin and childhood friend, Sakura Yoshino came back from America all of a sudden. To Junichi's surprise, she looks exactly the same as the girl that moved away six years ago, and hasn't aged one bit. And she came back to remind Junichi of their childhood promise... It is a bittersweet tale of magic, love, hidden desires, and unattainable dreams.

The protagonist, Yoshiyuki Sakurai, was born when Sakura Yoshino, weary of being alone for so long, wished upon a prototype artificial wish-granting magical sakura tree for a family. Similar to its predecessor, the story takes place on the same island, Hatsunejima, in Japan, and set fifty-three years after the original anime. The Asakura sisters are the granddaughters of Junichi Asakura and Nemu Asakura from the first Da Capo. Sakura Yoshino and Junichi are the only returning characters, and Nemu is the only other character to be mentioned by name.

Uruno, a useless wolf, is on the road searching for a new place to call home. He soon comes upon a whole forest full of "useless animals"-- that is, animals that don't live up to their species' usual character.

Emperor Muge Zarbados and his Empire of Death decide that their next conquest will be the faraway planet of Earth. Muge becomes even more fearsome because of Shapiro Keats, a power-hungry Earthling-turned-traitor. It's up to Shinobu, Sara (Shapiro's old girldfriend), Masato, and Ryo of the Jyusenkitai/Cyber Beast Force to pilot the four Jyusenki/Beast Mecha (Eagle Fighter, Land Cougar, Land Liger, and Big Moth [a mammoth mecha]), which can combine into the giant mech Dancougar.

In an alternate Tokyo, a different breed of humans with powers, called contractors, are causing havoc. One organization of contractors are working towards something suspicious.